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| Award | Year (↓) | Category | Nominee / Winner | Person |
|---|---|---|---|---|
| Empire | 2008 | 50 Greatest TV Shows of All Time (#19) | Winner | |
| Box Office Prophet Reader Award | 2008 | Best TV Show (#13) | Winner | |
| AOL Television All Time Lists | 2008 | TV's 50 Best Comedies of All Time (#40) | Winner | |
| futoncritic's Best Eps | 2008 | 50 Best Eps of 2006 (#43) | Winner | |
| ALMA Award | 2008 | Outstanding Female Performance in a Comedy Television Series | Nominee | Judy Reyes |
| Emmy Award | 2008 | Outstanding Cinematography for a Half-Hour Series | Nominee | John Inwood |
| Imagen Award | 2008 | Best Primetime Series | Nominee | |
| NAACP Image Award | 2008 | Outstanding Actor in a Comedy Series | Nominee | Donald Faison |
| Cinema Audio Society Award | 2008 | Outstanding Achievement in Sound Mixing for a Television Series | Nominee | Joe Foglia; John W. Cook; Peter Nusbaum |
| Golden Reel Award (MPSE) | 2008 | Outstanding Music Editing in Short Form Television | Winner | |
| Emmy Award | 2007 | Outstanding Directing for a Comedy Series | Nominee | Will Mackenzie |
| futoncritic's Best Eps | 2007 | 50 Best Eps of 2006 (#38) | Winner | |
| Impact Award | 2007 | Outstanding Performance in a Comedy Series | Winner | Judy Reyes |
| Tubey Award | 2007 | Best HoYay! Moment (#2) | Voted | Guy Love song |
| Imagen Award | 2007 | Best Lead Actress in Television | Nominee | Judy Reyes |
| American Latino TV Awards | 2007 | Favorite American Latino Actor | Nominee | Judy Reyes |
| ALMA Award | 2007 | Outstanding Director in a Television Series, Mini-series or TV Movie | Nominee | Linda Mendoza |
| Golden Globe Award | 2007 | Outstanding Actor in a Television Comedy or Musical Series | Nominee | Zach Braff |
| Humanitas Prize | 2007 | 30 Minute Primetime Network, Syndicated, Cable or PBS Teleplay | Finalist | Bill Callahan |
| Emmy Award | 2007 | Outstanding Original Music and Lyrics | Nominee | Debra Fordham; Robert Lopez; Jeff Marx |
| Emmy Award | 2007 | Outstanding Original Music and Lyrics | Nominee | Debra Fordham; Paul F. Perry |
| RATTY Award | 2007 | Best Comedy Series | Nominee | |
| RATTY Award | 2007 | Best Directing in a Comedy Series | Nominee | Will Mackenzie |
| Emmy Award | 2007 | Outstanding Sound Mixing for a Half-Hour Series or Animated Program | Winner | Joe Foglia; John W. Cook II; Peter J. Nusbaum |
| Peabody Award | 2007 | Winner | ||
| RATTY Award | 2007 | Best Guest Actress in a Comedy Series | Winner | Elizabeth Banks |
| RATTY Award | 2007 | Best Guest Actress in a Comedy Series | Nominee | Keri Russell |
| RATTY Award | 2007 | Best Lead Actor in a Comedy Series | Nominee | Zach Braff |
| Box Office Prophet Reader Award | 2007 | Best TV Show (#8) | Winner | |
| Emmy Award | 2007 | Outstanding Music Direction | Nominee | Jan Stevens |
| NAACP Image Award | 2007 | Outstanding Actor in a Comedy Series | Nominee | Donald Faison |
| Calvin Award | 2007 | Best TV Show (#7) | Winner | |
| Teen Choice Award | 2007 | Choice TV Sidekick | Nominee | Donald Faison |
| Environmental Media Association Award | 2007 | Turner Award | Winner | |
| TelevisionWeek's Critics Poll | 2006.02 | Best Television (#13) | Winner | |
| Golden Tater Award | 2006 | Favorite Funnylady (#2) | Voted | Sarah Chalke |
| Cadet Award | 2006 | Outstanding Supporting Actor in a Comedy Series | Winner | Donald Faison |
| Golden Tater Award | 2006 | Best Line (#3) | Voted | ''I love Grey's Anatomy. It's like they took our lives and put it on TV.'' J.D. |
| Cadet Award | 2006 | Outstanding Supporting Actress in a Comedy Series | Winner | Sarah Chalke |
| RATTY Award | 2006 | Best Supporting Actor in a Comedy Series | Nominee | John C. McGinley |
| NAACP Image Award | 2006 | Outstanding Actor in a Comedy Series | Nominee | Donald Faison |
| ALMA Award | 2006 | Outstanding Actress in a Television Series | Winner | Judy Reyes |
| Tubey Award | 2006 | Best Credit Sequence (#3) | Voted | |
| Golden Tater Award | 2006 | Best Comedy (#1) | Voted | |
| Zap2it Best/Worst | 2006 | TV Gal's Best in Show (#7) | Winner | |
| Television Critics Association Award | 2006 | Outstanding Achievement in a Comedy Series | Nominee | |
| Golden Globe Award | 2006 | Outstanding Actor in a Television Comedy or Musical Series | Nominee | Zach Braff |
| Broadcasting & Cable Critics Poll | 2006 | Best Comedy (#3) | Voted | |
| Tubey Award | 2006 | Best Relationship (#2) | Voted | J.D. & Turk |
| Cadet Award | 2006 | Outstanding Ensemble in a Comedy Series | Nominee |
